Aedín C. Culhane : rechercher sur Z-Library

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Articles (40)
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1

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data

Ian B Jeffery, Desmond G Higgins, Aedín C Culhane

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 483 KB

english, 2006

2

Dimension reduction techniques for the integrative analysis of multi-omics data

Meng, Chen, Zeleznik, Oana A., Thallinger, Gerhard G., Kuster, Bernhard, Gholami, Amin M., Culhane, Aedín C.

Journal:

Briefings in Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 749 KB

english, 2016

3

A multivariate analysis approach to the integration of proteomic and gene expression data

Ailís Fagan, Aedín C. Culhane, Desmond G. Higgins

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 389 KB

english, 2007

4

Software for the Integration of Multiomics Experiments in Bioconductor

Ramos, Marcel, Schiffer, Lucas, Re, Angela, Azhar, Rimsha, Basunia, Azfar, Rodriguez, Carmen, Chan, Tiffany, Chapman, Phil, Davis, Sean R., Gomez-Cabrero, David, Culhane, Aedin C., Haibe-Kains, Benjam

Journal:

Cancer Research

Année:

2017

Langue:

english

Fichier:

PDF, 477 KB

english, 2017

5

From Genes to Milk: Genomic Organization and Epigenetic Regulation of the Mammary Transcriptome

Lemay, Danielle G., Pollard, Katherine S., Martin, William F., Freeman Zadrowski, Courtneay, Hernandez, Joseph, Korf, Ian, German, J. Bruce, Rijnkels, Monique, Culhane, Aedín C.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2013

6

CENP-F expression is associated with poor prognosis and chromosomal instability in patients with primary breast cancer

Sallyann L. O'Brien, Ailís Fagan, Edward J.P. Fox, Robert C. Millikan, Aedín C. Culhane, Donal J. Brennan, Amanda H. McCann, Shauna Hegarty, Siobhan Moyna, Michael J. Duffy, Desmond G. Higgins, Karin

Journal:

International Journal of Cancer

Année:

2007

Langue:

english

Fichier:

PDF, 652 KB

english, 2007

7

Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue

Dung-Tsa Chen, Aejaz Nasir, Aedin Culhane, Chinnambally Venkataramu, William Fulp, Renee Rubio, Tao Wang, Deepak Agrawal, Susan M. McCarthy, Mike Gruidl, Gregory Bloom, Tove Anderson, Joe White, John

Journal:

Breast Cancer Research and Treatment

Année:

2010

Langue:

english

Fichier:

PDF, 502 KB

english, 2010

8

Repeatability of published microarray gene expression analyses

Ioannidis, John P A, Allison, David B, Ball, Catherine A, Coulibaly, Issa, Cui, Xiangqin, Culhane, Aedín C, Falchi, Mario, Furlanello, Cesare, Game, Laurence, Jurman, Giuseppe

Journal:

Nature Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 391 KB

english, 2008

9

Mechanisms Driving Local Breast Cancer Recurrence in a Model of Breast-Conserving Surgery

Myles J. Smith, Aedín C. Culhane, Shane Killeen, Maura A. Kelly, Jiang H. Wang, Thomas G. Cotter, Henry P. Redmond

Journal:

Annals of Surgical Oncology

Année:

2008

Langue:

english

Fichier:

PDF, 279 KB

english, 2008

10

P28: Advanced image analysis of immunohistochemistry on tumour specimens

Elton Rexhepaj, Donal J. Brennan, Karin Jirstrom, Åsa Kronblad, Ailís Fagan, Aedín C. Culhane, Robert C. Millikan, Göran Landberg, Michael J. Duffy, Lisa Rydén, Desmond G. Higgins, Sallyann L. O’Brien

Journal:

Experimental and Toxicologic Pathology

Année:

2009

Langue:

english

Fichier:

PDF, 59 KB

english, 2009

11

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

Aedín C Culhane, Guy Perrière, Desmond G Higgins

Journal:

BMC Bioinformatics

Année:

2003

Langue:

english

Fichier:

PDF, 500 KB

english, 2003

12

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

Florent Baty, Michel P Bihl, Guy Perrière, Aedín C Culhane, Martin H Brutsche

Journal:

BMC Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 484 KB

english, 2005

13

Apoptosis: Molecular Regulation of Cell Death

Annette J. Hale, Christopher A. Smith, Leslie C. Sutherland, Victoria E. A. Stoneman, Vanessa L. Longthorne, Aedín C. Culhane, Gwyn T. Williams

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 3.59 MB

english, 1996

14

Functional classification analysis of somatically mutated genes in human breast and colorectal cancers

Thomas W. Chittenden, Eleanor A. Howe, Aedin C. Culhane, Razvan Sultana, Jennifer M. Taylor, Chris Holmes, John Quackenbush

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 934 KB

english, 2008

15

Detection of the interleukin 18 family in rat brain by RT-PCR

Rachel D Wheeler, Aedin C Culhane, Matthew D Hall, Stuart Pickering-Brown, Nancy J Rothwell, Giamal N Luheshi

Journal:

Molecular Brain Research

Année:

2000

Langue:

english

Fichier:

PDF, 86 KB

english, 2000

16

Buehler LK, Rashidi HH:Bioinformatics Basics: Applications in Biological Science and MedicineSecond edition

Journal:

BioMedical Engineering OnLine

Année:

2006

Langue:

english

Fichier:

PDF, 407 KB

english, 2006

17

Identification of transcription factors associated with castration-resistance: Is the serum responsive factor a potential therapeutic target?

Prencipe, Maria, Madden, Stephen F., O'Neill, Amanda, O'Hurley, Gillian, Culhane, Aedin, O'Connor, Darran, Klocker, Helmut, Kay, Elaine W., Gallagher, William M., Watson, William R.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2013

18

A multivariate approach to the integration of multi-omics datasets

Meng, Chen, Kuster, Bernhard, Culhane, Aedín C, Gholami, Amin

Journal:

BMC Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 831 KB

english, 2014

19

Application of DNA microarray technology in determining breast cancer prognosis and therapeutic response

Brennan, Donal J, O’Brien, Sallyann L, Fagan, Ailís, Culhane, Aedín C, Higgins, Desmond G, Duffy, Michael J, Gallagher, William M

Journal:

Expert Opinion on Biological Therapy

Année:

2005

Langue:

english

Fichier:

PDF, 526 KB

english, 2005

20

Taxonomy of breast cancer based on normal cell phenotype predicts outcome

Santagata, Sandro, Thakkar, Ankita, Ergonul, Ayse, Wang, Bin, Woo, Terri, Hu, Rong, Harrell, J. Chuck, McNamara, George, Schwede, Matthew, Culhane, Aedin C., Kindelberger, David, Rodig, Scott, Richard

Journal:

Journal of Clinical Investigation

Année:

2014

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2014

21

DNA Microarray-Based Gene Expression Profiling in Cancer: Aiding Cancer Diagnosis, Assessing Prognosis and Predicting Response to Therapy

Duffy, Michael, Kelly, Zoe, Culhane, Aedín, O'Brien, Sallyann, Gallagher, William

Journal:

Current Pharmacogenomics

Année:

2005

Langue:

english

Fichier:

PDF, 217 KB

english, 2005

22

Significance Analysis of Prognostic Signatures

Beck, Andrew H., Knoblauch, Nicholas W., Hefti, Marco M., Kaplan, Jennifer, Schnitt, Stuart J., Culhane, Aedin C., Schroeder, Markus S., Risch, Thomas, Quackenbush, John, Haibe-Kains, Benjamin, Tucker

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 578 KB

english, 2013

23

USE OF COMPETITIVE PCR TO MONITOR EXPRESSION OF THE bcl-2, bcl-x, mcl-1, bax, bak AND bfl-1 GENES DURING THE INDUCTION OF APOPTOSIS IN HUMAN HAEMATOPOIETIC CELL LINES

Smith, Christopher A., Ganderton, Sue K., Culhane, Aedin C., Leite, Pedro S., Williams, Gwyn T.

Journal:

Biochemical Society Transactions

Année:

1996

Langue:

english

Fichier:

PDF, 120 KB

english, 1996

24

Molecular Subtypes Improve Prognostic Value of International Metastatic Renal Cell Carcinoma Database Consortium Prognostic Model

de Velasco, Guillermo, Culhane, Aedín C., Fay, André P., Ari Hakimi, A., Voss, Martin H., Tannir, Nizar M., Tamboli, Pheroze, Appleman, Leonard J., Bellmunt, Joaquim, Kimryn Rathmell, W., Albiges, Lau

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 519 KB

english, 2017

25

In Reply

de Velasco, Guillermo, Culhane, Aedín C., Heng, Daniel Y.C., Signoretti, Sabina, Choueiri, Toni K.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 68 KB

english, 2017

26

Therapeutic Implications of GIPC1 Silencing in Cancer

Chittenden, Thomas W., Pak, Jane, Rubio, Renee, Cheng, Hailing, Holton, Kristina, Prendergast, Niall, Glinskii, Vladimir, Cai, Yi, Culhane, Aedin, Bentink, Stefan, Schwede, Mathew, Mar, Jessica C., Ho

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 625 KB

english, 2010

27

Integrated Analysis of Multiple Microarray Datasets Identifies a Reproducible Survival Predictor in Ovarian Cancer

Konstantinopoulos, Panagiotis A., Cannistra, Stephen A., Fountzilas, Helen, Culhane, Aedin, Pillay, Kamana, Rueda, Bo, Cramer, Daniel, Seiden, Michael, Birrer, Michael, Coukos, George, Zhang, Lin, Qua

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 570 KB

english, 2011

28

Angiogenic mRNA and microRNA Gene Expression Signature Predicts a Novel Subtype of Serous Ovarian Cancer

Bentink, Stefan, Haibe-Kains, Benjamin, Risch, Thomas, Fan, Jian-Bing, Hirsch, Michelle S., Holton, Kristina, Rubio, Renee, April, Craig, Chen, Jing, Wickham-Garcia, Eliza, Liu, Joyce, Culhane, Aedin,

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2012

29

Loss of BRCA1-A Complex Function in RAP80 Null Tumor Cells

Bian, Chunjing, Wu, Rong, Cho, Kathleen, Yu, Xiaochun, Culhane, Aedín C.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2012

30

Survival Prediction Based on Compound Covariate under Cox Proportional Hazard Models

Emura, Takeshi, Chen, Yi-Hau, Chen, Hsuan-Yu, Culhane, Aedín C.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 421 KB

english, 2012

31

A Data Similarity-Based Strategy for Meta-analysis of Transcriptional Profiles in Cancer

Qiu, Qingchao, Lu, Pengcheng, Xiang, Yuzhu, Shyr, Yu, Chen, Xi, Lehmann, Brian David, Viox, Daniel Joseph, George, Alfred L., Yi, Yajun, Culhane, Aedín C.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 420 KB

english, 2013

32

Neoplastic and Stromal Cells Contribute to an Extracellular Matrix Gene Expression Profile Defining a Breast Cancer Subtype Likely to Progress

Triulzi, Tiziana, Casalini, Patrizia, Sandri, Marco, Ratti, Manuela, Carcangiu, Maria L., Colombo, Mario P., Balsari, Andrea, Ménard, Sylvie, Orlandi, Rosaria, Tagliabue, Elda, Culhane, Aedín C.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2013

33

Comprehensive Analysis of Long Non-Coding RNAs in Ovarian Cancer Reveals Global Patterns and Targeted DNA Amplification

Akrami, Rozita, Jacobsen, Anders, Hoell, Jessica, Schultz, Nikolaus, Sander, Chris, Larsson, Erik, Culhane, Aedín C.

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2013

34

Meta-Analysis and Gene Set Analysis of Archived Microarrays Suggest Implication of the Spliceosome in Metastatic and Hypoxic Phenotypes

De Meulder, Bertrand, Berger, Fabrice, Bareke, Eric, Depiereux, Sophie, Michiels, Carine, Depiereux, Eric, Culhane, Aedín C.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2014

35

RelA-Induced Interferon Response Negatively Regulates Proliferation

Kochupurakkal, Bose S., Wang, Zhigang C., Hua, Tony, Culhane, Aedin C., Rodig, Scott J., Rajkovic-Molek, Koraljka, Lazaro, Jean-Bernard, Richardson, Andrea L., Biswas, Debajit K., Iglehart, J. Dirk, A

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.82 MB

english, 2015

36

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Stein-O’Brien, Genevieve L., Arora, Raman, Culhane, Aedin C., Favorov, Alexander V., Garmire, Lana X., Greene, Casey S., Goff, Loyal A., Li, Yifeng, Ngom, Aloune, Ochs, Michael F., Xu, Yanxun, Fertig,

Journal:

Trends in Genetics

Année:

2018

Fichier:

PDF, 2.28 MB

2018

37

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Stein-O’Brien, Genevieve L., Arora, Raman, Culhane, Aedin C., Favorov, Alexander V., Garmire, Lana X., Greene, Casey S., Goff, Loyal A., Li, Yifeng, Ngom, Aloune, Ochs, Michael F., Xu, Yanxun, Fertig,

Journal:

Trends in Genetics

Année:

2018

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2018

38

BRCA1-IRIS promotes human tumor progression through PTEN blockade and HIF-1α activation

Li, Andrew G., Murphy, Elizabeth C., Culhane, Aedin C., Powell, Emily, Wang, Hua, Bronson, Roderick T., Von, Thanh, Giobbie-Hurder, Anita, Gelman, Rebecca S., Briggs, Kimberly J., Piwnica-Worms, Helen

Journal:

Proceedings of the National Academy of Sciences

Année:

2018

Langue:

english

Fichier:

PDF, 2.05 MB

english, 2018

39

MOGSA: integrative single sample gene-set analysis of multiple omics data

Meng, Chen, Basunia, Azfar, Peters, Bjoern, Moghaddas Gholami, Amin, Kuster, Bernhard, Culhane, Aedín C

Journal:

Molecular & Cellular Proteomics

Année:

2019

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2019

40

Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data

Hsu, Lauren L., Culhane, Aedin C.

Journal:

Frontiers in Oncology

Année:

2020

Fichier:

PDF, 961 KB

2020